PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G251700.2

Common Name

POPTR_0005s27310g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 876aa MW: 96937.4 Da PI: 6.3221

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G251700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.1e-29	569	619	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Potri.005G251700.2 569 EKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 619 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.552	558	639	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-25	571	619	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.33E-22	779	871	No hit	No description
SMART	SM00666	8.3E-23	789	872	IPR000270	PB1 domain
PROSITE profile	PS51745	24.801	789	872	IPR000270	PB1 domain
Pfam	PF00564	4.3E-17	790	871	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.1E-22	790	869	No hit	No description
CDD	cd06407	2.35E-37	790	869	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MMEDGVLSPG MMLGAAVDSA MDFDYMDELL LEGCWVETTD GSEFLNPTSS LSQKGSQEVS 60 HIPLLPGNSP SDIQSRSPVG EIAVSAAGWE YNATEGSELG KRWWIGPAPN PSPGTTVKRR 120 LIKAVECIKD LTKNKDVLIQ IWVPVNRGGR RVLTTHDQPF ALDPSSERLA SYRDISVKYQ 180 FSAEKDSKDS VGMPGRVFLG KVPEWTPDVR FFRNDEYPRV NHAQQCDVRG TLALPVFEQG 240 SRTCLGVIEV VTTSQKIKYL PELESVCKAL EACDMSYQAA LPEIQKVLRA ACETHRLPLA 300 QTWVPCIQQG KGGCRHSNEN YYHCVSTVDD ACCVGDPAFQ GFLEACSEHH LLKGQGVVGE 360 AFMTNQPCFS GDVTLYGKTE YPLSHHARIF GLCAAVAIRL RSMYTGTTDF VLEFFLPVDC 420 RDPQEQKTML TSLSIIIQRV CQTLRVVTVK ELEEETDLPV SEVLVPSDGR SSGEETSTVK 480 ESYSERNARD NSPWTACLLK VQQSESNASL SEKDKEKVMC EKSFESRHNQ EDYSLRGSTK 540 YGGDSTSAEG SFSSVCKTKP GEKRRAKTEK TITLQVLRQY FAGSLKDAAK SIGVCPTTLK 600 RICRQHGINR WPSRKIKKVS HSLQKLQCVI DSVEGAPGSV QIGSFYENFP ELASPNSSRN 660 SSLSTLNPSS HPKPSGIQLE GGTFSSHVAE PKSPSPSCSL SSSSSHSYSS TTQQYPSAIT 720 VSASEDPKLG ENLGSGVLKK IRSNAELHAS ILEERKLMLR SQSHTTLTEL GNRPPLPKDS 780 SRLSQEMDGH RVKVSFRNDK IRLRMPNNWV FKDLLQEIIR RFNLDDMHRY DLKYLDDDSE 840 WVLLACDDDL EECIDVCGSG DNQTIKLLIE VSPHP*

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MMEDGVLSPG MMLGAAVDSA MDFDYMDELL LEGCWVETTD GSEFLNPTSS LSQKGSQEVS  60
HIPLLPGNSP SDIQSRSPVG EIAVSAAGWE YNATEGSELG KRWWIGPAPN PSPGTTVKRR  120
LIKAVECIKD LTKNKDVLIQ IWVPVNRGGR RVLTTHDQPF ALDPSSERLA SYRDISVKYQ  180
FSAEKDSKDS VGMPGRVFLG KVPEWTPDVR FFRNDEYPRV NHAQQCDVRG TLALPVFEQG  240
SRTCLGVIEV VTTSQKIKYL PELESVCKAL EACDMSYQAA LPEIQKVLRA ACETHRLPLA  300
QTWVPCIQQG KGGCRHSNEN YYHCVSTVDD ACCVGDPAFQ GFLEACSEHH LLKGQGVVGE  360
AFMTNQPCFS GDVTLYGKTE YPLSHHARIF GLCAAVAIRL RSMYTGTTDF VLEFFLPVDC  420
RDPQEQKTML TSLSIIIQRV CQTLRVVTVK ELEEETDLPV SEVLVPSDGR SSGEETSTVK  480
ESYSERNARD NSPWTACLLK VQQSESNASL SEKDKEKVMC EKSFESRHNQ EDYSLRGSTK  540
YGGDSTSAEG SFSSVCKTKP GEKRRAKTEK TITLQVLRQY FAGSLKDAAK SIGVCPTTLK  600
RICRQHGINR WPSRKIKKVS HSLQKLQCVI DSVEGAPGSV QIGSFYENFP ELASPNSSRN  660
SSLSTLNPSS HPKPSGIQLE GGTFSSHVAE PKSPSPSCSL SSSSSHSYSS TTQQYPSAIT  720
VSASEDPKLG ENLGSGVLKK IRSNAELHAS ILEERKLMLR SQSHTTLTEL GNRPPLPKDS  780
SRLSQEMDGH RVKVSFRNDK IRLRMPNNWV FKDLLQEIIR RFNLDDMHRY DLKYLDDDSE  840
WVLLACDDDL EECIDVCGSG DNQTIKLLIE VSPHP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306977.2	0.0	NIN-like protein 1
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	B9H5I1	0.0	B9H5I1_POPTR; NIN-like protein 1
STRING	POPTR_0005s27310.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Potri.005G251700.2
Entrez Gene	7485639