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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G251700.2 | ||||||||
Common Name | POPTR_0005s27310g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Nin-like | ||||||||
Protein Properties | Length: 876aa MW: 96937.4 Da PI: 6.3221 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.5 | 3.1e-29 | 569 | 619 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Potri.005G251700.2 569 EKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 619 79***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.552 | 558 | 639 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.9E-25 | 571 | 619 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 5.33E-22 | 779 | 871 | No hit | No description |
SMART | SM00666 | 8.3E-23 | 789 | 872 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 24.801 | 789 | 872 | IPR000270 | PB1 domain |
Pfam | PF00564 | 4.3E-17 | 790 | 871 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 5.1E-22 | 790 | 869 | No hit | No description |
CDD | cd06407 | 2.35E-37 | 790 | 869 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 876 aa Download sequence Send to blast |
MMEDGVLSPG MMLGAAVDSA MDFDYMDELL LEGCWVETTD GSEFLNPTSS LSQKGSQEVS 60 HIPLLPGNSP SDIQSRSPVG EIAVSAAGWE YNATEGSELG KRWWIGPAPN PSPGTTVKRR 120 LIKAVECIKD LTKNKDVLIQ IWVPVNRGGR RVLTTHDQPF ALDPSSERLA SYRDISVKYQ 180 FSAEKDSKDS VGMPGRVFLG KVPEWTPDVR FFRNDEYPRV NHAQQCDVRG TLALPVFEQG 240 SRTCLGVIEV VTTSQKIKYL PELESVCKAL EACDMSYQAA LPEIQKVLRA ACETHRLPLA 300 QTWVPCIQQG KGGCRHSNEN YYHCVSTVDD ACCVGDPAFQ GFLEACSEHH LLKGQGVVGE 360 AFMTNQPCFS GDVTLYGKTE YPLSHHARIF GLCAAVAIRL RSMYTGTTDF VLEFFLPVDC 420 RDPQEQKTML TSLSIIIQRV CQTLRVVTVK ELEEETDLPV SEVLVPSDGR SSGEETSTVK 480 ESYSERNARD NSPWTACLLK VQQSESNASL SEKDKEKVMC EKSFESRHNQ EDYSLRGSTK 540 YGGDSTSAEG SFSSVCKTKP GEKRRAKTEK TITLQVLRQY FAGSLKDAAK SIGVCPTTLK 600 RICRQHGINR WPSRKIKKVS HSLQKLQCVI DSVEGAPGSV QIGSFYENFP ELASPNSSRN 660 SSLSTLNPSS HPKPSGIQLE GGTFSSHVAE PKSPSPSCSL SSSSSHSYSS TTQQYPSAIT 720 VSASEDPKLG ENLGSGVLKK IRSNAELHAS ILEERKLMLR SQSHTTLTEL GNRPPLPKDS 780 SRLSQEMDGH RVKVSFRNDK IRLRMPNNWV FKDLLQEIIR RFNLDDMHRY DLKYLDDDSE 840 WVLLACDDDL EECIDVCGSG DNQTIKLLIE VSPHP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306977.2 | 0.0 | NIN-like protein 1 | ||||
Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
TrEMBL | B9H5I1 | 0.0 | B9H5I1_POPTR; NIN-like protein 1 | ||||
STRING | POPTR_0005s27310.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G251700.2 |
Entrez Gene | 7485639 |